Package: MOSuite
Title: R package for differential multi-omics analysis
Version: 0.5.0.9000
Authors@R: c(
    person("Kelly", "Sovacool", , "kelly.sovacool@nih.gov", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-3283-829X")),
    person("Philip", "Homan", , "philip.homan@nih.gov", role = "aut"),
    person("Vishal", "Koparde", , "vishal.koparde@nih.gov", role = "aut",
           comment = c(ORCID = "0000-0001-8978-8495")),
    person("Samantha", "Chill", , "samantha.chill@nih.gov", role = "aut",
           comment = c(ORCID = "0000-0002-8734-9875")),
    person("T. Joshua", "Meyer", , "thomas.meyer@nih.gov", role = "ctb"),
    person("CCR Collaborative Bioinformatics Resource", role = "cph")
  )
Description: Multi-Omics Suite provides a suite of functions to clean,
        filter, batch-correct, normalize, visualize, and perform
        differential analysis. While the package is designed for
        differential RNA-seq analysis and multi-omics datasets, it can
        be used for any data represented in a counts table. See the
        website for more information, documentation, and examples at
        <https://ccbr.github.io/MOSuite/>.
License: MIT + file LICENSE
URL: https://github.com/CCBR/MOSuite, https://ccbr.github.io/MOSuite/
BugReports: https://github.com/CCBR/MOSuite/issues
Depends: R (>= 4.1.0)
Imports: assertthat, cli, dendextend, DESeq2, dplyr, edgeR, ggplot2,
        glue, grid, htmlwidgets, jsonlite, limma, matrixStats, methods,
        MOObject (>= 0.5.0), options, plotly, purrr, reshape2, rlang,
        S7, stats, stringr, tibble, tidyr, tidyselect
Suggests: amap, argparse, broom, cffr, colorspace, ComplexHeatmap,
        dendsort, docopt, EnhancedVolcano, ggrepel, gridExtra, knitr,
        lobstr, patchwork, plotrix, quarto, RColorBrewer, Rd2md, readr,
        rmarkdown, roxygen2 (>= 8.0.0), scales, styler, sva, testthat
        (>= 3.0.0), UpSetR, usethis, V8, VennDiagram, withr
Remotes: CCBR/MOObject
VignetteBuilder: knitr
biocViews:
Config/Needs/dev: cffr, covr, here, lintr, pkgdown, rcmdcheck, xml2
Config/roxygen2/version: 8.1.1
Config/testthat/edition: 3
Config/testthat/parallel: true
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
Roxygen: list(markdown = TRUE)
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        libx11-dev zlib1g-dev
Repository: https://kelly-sovacool.r-universe.dev
Date/Publication: 2026-10-15 13:48:30 UTC
RemoteUrl: https://github.com/CCBR/MOSuite
RemoteRef: HEAD
RemoteSha: 6c8137e5dd1cdbcdb913b1cce23969e330e961bb
NeedsCompilation: no
Packaged: 2026-10-15 17:33:42 UTC; root
Author: Kelly Sovacool [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3283-829X>),
  Philip Homan [aut],
  Vishal Koparde [aut] (ORCID: <https://orcid.org/0000-0001-8978-8495>),
  Samantha Chill [aut] (ORCID: <https://orcid.org/0000-0002-8734-9875>),
  T. Joshua Meyer [ctb],
  CCR Collaborative Bioinformatics Resource [cph]
Maintainer: Kelly Sovacool <kelly.sovacool@nih.gov>