Changes in version 0.4.1 (2023-08-21)                  

  - Minor bug fix in get_wildcards_tbl() (#48, @kelly-sovacool).
  - Fix roxygen package doc syntax
    (https://github.com/r-lib/roxygen2/issues/1491, @kelly-sovacool).

                 Changes in version 0.4.0 (2023-01-16)                  

  - set_knitr_opts() now sets message to FALSE (#45, @kelly-sovacool).
  - New function get_wildcards_tbl() returns the Snakemake wildcards
    list as a tibble (#46, @kelly-sovacool).

                 Changes in version 0.3.1 (2022-11-16)                  

  - Fixes for API changes in ggplot2 v3.4.0 and tidyselect v1.2.0 (#42,
    #44, @kelly-sovacool).
  - pool_taxon_counts() now takes the taxon_level argument as a
    character rather than a data variable (#43, @kelly-sovacool).

                 Changes in version 0.3.0 (2022-10-05)                  

  - New function log_snakemake() redirects all output to a rule-specific
    log file when called by a Snakemake rule (#35, @kelly-sovacool).
  - New function pool_taxon_counts() pools OTU counts at a particular
    taxonomic level (e.g. genus, phylum, etc.) to enable comparing
    analyses at different taxonomic resolutions, as seen in
    https://doi.org/10.1128/mbio.03161-21 (#37, @kelly-sovacool).
  - New function calc_relabun() calculates OTU relative abundances (#38,
    @kelly-sovacool).
  - New custom themes for ggplot2:
      - theme_sovacool() (#39, @kelly-sovacool)
      - theme_lucas() (#40, @sklucas)

                 Changes in version 0.2.1 (2022-05-11)                  

  - Improvements to parse_tax() (#32, @kelly-sovacool).
      - New column label_html provides HTML to correctly italicize genus
        names but not OTU labels.
      - Added an example to the intro vignette to demonstrate using this
        feature with ggtext.
      - Changed taxonomy data frame column names to lowercase and
        reordered them.
  - Minor documentation improvements (#33, @kelly-sovacool).

                 Changes in version 0.1.1 (2022-03-11)                  

  - Refactored read_tax() (#30, @kelly-sovacool).
      - New function parse_tax() to separate the logic of reading and
        parsing taxonomy files.
      - read_tax() now accepts a sep parameter to handle different delim
        file types (e.g. csv or tsv).
  - schtools now has a logo! (#31, @kelly-sovacool)

                 Changes in version 0.1.0 (2021-11-22)                  

This is the first release version of schtools! 🎉

  - You can now install schtools from CRAN!
  - Added a NEWS.md file to track changes to the package.
  - Major new functions:
      - read_dist() (#10, @NLesniak)
      - read_tax() (#22, @NLesniak)
      - set_knitr_opts() (#21, @pschloss, @kelly-sovacool)
      - inline_hook() (#21, @pschloss, @kelly-sovacool)
      - paste_oxford_list() (#21, @pschloss, @kelly-sovacool)
      - format_number() (#24, @pschloss, @kelly-sovacool)
      - is_nearly_whole() (#24, @pschloss, @kelly-sovacool)
      - close_enough() (#26, @kelly-sovacool)
      - is_nondesc() (#28, @kelly-sovacool)
  - New vignettes:
      - introduction