Package: schtools 0.4.1.9000

schtools: Schloss Lab Tools for Reproducible Microbiome Research

A collection of useful functions and example code created and used by the Schloss Lab for reproducible microbiome research. Perform common tasks like read files created by mothur <https://mothur.org/>, tidy up your microbiome data, and format R Markdown documents for publication. See the website <http://www.schlosslab.org/schtools/> for more information, documentation, and examples.

Authors:Kelly Sovacool [aut, cre], Nicholas Lesniak [aut], Sarah Lucas [aut], Courtney Armour [aut], Patrick Schloss [aut], Jacqueline Moltzau [ctb], Andrew Hannah [ctb], Nielson Baxter [ctb], Alyxandria Schubert [ctb], Kathryn Iverson [ctb]

schtools_0.4.1.9000.tar.gz
schtools_0.4.1.9000.zip(r-4.7)schtools_0.4.1.9000.zip(r-4.6)schtools_0.4.1.9000.zip(r-4.5)
schtools_0.4.1.9000.tgz(r-4.6-any)schtools_0.4.1.9000.tgz(r-4.5-any)
schtools_0.4.1.9000.tar.gz(r-4.7-any)schtools_0.4.1.9000.tar.gz(r-4.6-any)
schtools_0.4.1.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
schtools/json (API)
NEWS

# Install 'schtools' in R:
install.packages('schtools', repos = c('https://kelly-sovacool.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/schlosslab/schtools/issues

Pkgdown/docs site:https://www.schlosslab.org

On CRAN:

Conda:

microbiomemothur

5.65 score 32 stars 35 scripts 40 downloads 19 exports 21 dependencies

Last updated from:b066acf96b. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK164
source / vignettesOK212
linux-release-x86_64OK154
macos-release-arm64OK104
macos-oldrel-arm64OK107
windows-develOK95
windows-releaseOK95
windows-oldrelOK93
wasm-releaseOK129

Exports:.data%>%calc_relabunclose_enoughformat_numberget_wildcards_tblinline_hookis_nearly_wholeis_nondescload_depslog_snakemakeparse_taxpaste_oxford_listpool_taxon_countsread_distread_taxset_knitr_optstheme_lucastheme_sovacool

Dependencies:clicpp11dplyrformatRgenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr

Introduction to schtools

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Jun 09 2026.

Last update: 2022-11-15
Started: 2020-09-04