Package: schtools 0.4.1.9000

schtools: Schloss Lab Tools for Reproducible Microbiome Research

A collection of useful functions and example code created and used by the Schloss Lab for reproducible microbiome research. Perform common tasks like read files created by mothur <https://mothur.org/>, tidy up your microbiome data, and format R Markdown documents for publication. See the website <http://www.schlosslab.org/schtools/> for more information, documentation, and examples.

Authors:Kelly Sovacool [aut, cre], Nicholas Lesniak [aut], Sarah Lucas [aut], Courtney Armour [aut], Patrick Schloss [aut], Jacqueline Moltzau [ctb], Andrew Hannah [ctb], Nielson Baxter [ctb], Alyxandria Schubert [ctb], Kathryn Iverson [ctb]

schtools_0.4.1.9000.tar.gz
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schtools.pdf |schtools.html✨
schtools/json (API)
NEWS

# Install 'schtools' in R:
install.packages('schtools', repos = c('https://kelly-sovacool.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/schlosslab/schtools/issues

Pkgdown site:https://www.schlosslab.org

On CRAN:

Conda:

microbiomemothur

6.62 score 30 stars 35 scripts 279 downloads 19 exports 22 dependencies

Last updated 2 years agofrom:b066acf96b. Checks:8 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 17 2025
R-4.5-winOKFeb 17 2025
R-4.5-macOKFeb 17 2025
R-4.5-linuxOKFeb 17 2025
R-4.4-winOKFeb 17 2025
R-4.4-macOKFeb 17 2025
R-4.3-winOKFeb 17 2025
R-4.3-macOKFeb 17 2025

Exports:.data%>%calc_relabunclose_enoughformat_numberget_wildcards_tblinline_hookis_nearly_wholeis_nondescload_depslog_snakemakeparse_taxpaste_oxford_listpool_taxon_countsread_distread_taxset_knitr_optstheme_lucastheme_sovacool

Dependencies:clicpp11dplyrfansiformatRgenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr

Introduction to schtools

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Feb 17 2025.

Last update: 2022-11-15
Started: 2020-09-04