Package: MOObject 0.5.0.9000

MOObject: multiOmicDataSet object class for MOSuite

MOObject defines the multiOmicDataSet object class which is used in MOSuite for differential RNA-seq and multi-omics analyses. Separating the MOObject class definition from MOSuite allows for lightweight installations in downstream workflows. See the website for more information: <https://ccbr.github.io/MOObject/>. See the MOSuite website for the most comprehensive documentation: <https://ccbr.github.io/MOSuite/>.

Authors:Kelly L Sovacool [aut, cre], Philip Homan [aut], Vishal Koparde [aut], CCR Collaborative Bioinformatics Resource [cph]

MOObject_0.5.0.9000.tar.gz
MOObject_0.5.0.9000.zip(r-4.7-any)MOObject_0.5.0.9000.zip(r-4.6-any)MOObject_0.5.0.9000.zip(r-4.5-any)
MOObject_0.5.0.9000.tgz(r-4.6-any)MOObject_0.5.0.9000.tgz(r-4.5-any)
MOObject_0.5.0.9000.tar.gz(r-4.7-any)MOObject_0.5.0.9000.tar.gz(r-4.6-any)
MOObject_0.5.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MOObject/json (API)

# Install 'MOObject' in R:
install.packages('MOObject', repos = c('https://kelly-sovacool.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ccbr/moobject/issues

Pkgdown/docs site:https://ccbr.github.io

On CRAN:

Conda:

2.30 score 4 scripts 8 exports 25 dependencies

Last updated from:36830c75bd. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-develOK112
source / vignettesOK162
linux-releaseOK151
macos-releaseOK94
macos-oldrelOK98
windows-develOK92
windows-releaseOK63
windows-oldrelOK96
wasm-releaseOK122

Exports:create_multiOmicDataSet_from_dataframescreate_multiOmicDataSet_from_filesextract_countsmultiOmicDataSetread_multiOmicDataSetread_multiOmicDataSet_propertieswrite_multiOmicDataSetwrite_multiOmicDataSet_properties

Dependencies:bitbit64clicliprcpp11crayongluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogressR6readrrlangS7tibbletidyselecttzdbutf8vctrsvroomwithr

Readme and manuals

Help Manual

Help pageTopics
Construct a multiOmicDataSet object from data framescreate_multiOmicDataSet_from_dataframes
Construct a multiOmicDataSet object from text files (e.g. TSV, CSV).create_multiOmicDataSet_from_files
Extract count dataextract_counts extract_counts,MOObject::multiOmicDataSet-method
multiOmicDataSet classmultiOmicDataSet
Read a multiOmicDataSet from RDSread_multiOmicDataSet
Read multiOmicDataSet properties from individual files.read_multiOmicDataSet_properties
Write a multiOmicDataSet to RDSwrite_multiOmicDataSet
Write multiOmicDataSet properties to individual files.write_multiOmicDataSet_properties write_multiOmicDataSet_properties,MOObject::multiOmicDataSet-method